ADVANCES IN BIOINFORMATICS, BIOSTATISTICS AND OMIC SCIENCES

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Bibliographic Details
Main Author: Donato, Luigi
Other Authors: Alibrandi, Simona, D'angelo, Rosalia
Format: Electronic eBook
Language:English
Published: [S.l.] : BENTHAM SCIENCE PUBLISHERS, 2020.
Subjects:
Online Access: Full text (Emmanuel users only)

MARC

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245 1 0 |a ADVANCES IN BIOINFORMATICS, BIOSTATISTICS AND OMIC SCIENCES  |h [electronic resource]. 
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505 0 |a Cover -- Title -- Copyright -- End User License Agreement -- Contents -- Foreword -- Preface -- CONSENT FOR PUBLICATION -- CONFLICT OF INTEREST -- ACKNOWLEDGEMENTS -- New Integrated Mitochondrial DNA Bioinformatics Pipeline to Improve Quality Assessment of Putative Pathogenic Variants from NGS Experiments -- INTRODUCTION -- MATERIAL AND METHODS -- Samples -- Mitogenome Assembly/Mapping -- Variant Detection by mtDNA-Server -- Variant Annotation and Prioritization -- In Silico Predictions and Variant Consequences -- RESULTS -- Alignment and Assembly of mtDNAs -- Mitogenome Annotations 
505 8 |a MtDNA Variant Calling and Annotations -- In Silico Functional Consequences and Pathogenicity Predictions -- DISCUSSION -- CONCLUSION AND PERSPECTIVES -- REFERENCES -- Variant Calling on RNA Sequencing Data: State of Art and Future Perspectives -- INTRODUCTION -- NEXT-GENERATION SEQUENCING -- Variant Calling -- Differential Gene Expression Analysis -- VARIANT CALLING FROM RNA-SEQ DATA: WHAT'S THE NEW? -- WHERE VARIANT CALLING ON DNA DOES NOT ARRIVE: RNA EDITING AND IMPRINTING PROFILES -- CONCLUDING REMARKS -- REFERENCES -- An Innovative Gene Prioritization Pipeline for DNA-Sequencing Analyses 
505 8 |a INTRODUCTION -- MATERIALS AND METHODS -- Prioritization of Genes Carrying Variants Obtained From CLC Genomics Workbench -- STOP_ (KNO+UNK) _&_NONSYN_(KNOWN) -- NEW MUT & SNPS IN NEW GENES -- Prioritization of Genes Obtained from DNASTAR Lasergene Suite -- Prioritization by ToppGene -- RESULTS -- Results from CLC Genomics Workbench -- Results from DNASTAR Lasergene Suite -- Results from ToppGene -- DISCUSSION -- REFERENCES -- New Integrated Differential Expression Approach for RNA-Seq Data Analysis -- INTRODUCTION -- MATERIAL AND METHODS 
505 8 |a Software Packages for Detecting Differentially Expressed Genes -- DESEeq2 -- edgeR -- Limma -- SAMSeq -- TweeDESeq -- ANOVA -- Other Methods -- Datasets and Methods -- DE Tools and Normalization Methods -- ANALYSIS -- RESULTS -- Validity of DEG Analysis Tools and Concordance Analysis -- Integration of DEG Methods and Performances Evaluation -- DISCUSSION -- CONCLUDING REMARKS -- NOTES -- REFERENCES -- Innovations in Data Visualization for Straightforward Interpretation of Nucleic Acid Omics Outcomes -- INTRODUCTION -- MATERIALS AND METHODS -- DNA-Sequencing: Circos and VIVA tools 
505 8 |a RNA-Sequencing: Omics Playground Suite -- Pathway Analysis: ClueGO and CluePedia Cytoscape plug-ins -- RESULTS -- WES Circular Plot by Circos and Heat Maps by VIVA Provide a Strength Summary of Variant Data -- Omics Playground Provided a Straightforward Full-featured Output of RNA-Seq Samples -- ClueGO and CluePedia Analyses Produced Appealing Graphical Representation of Pathways and Enrichments Involved Clustered Genes -- DISCUSSION -- CONCLUSIONS -- REFERENCES -- Subject Index -- Back Cover 
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700 1 |a D'angelo, Rosalia. 
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